PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf14922g00027.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Dof
Protein Properties Length: 261aa    MW: 28452.9 Da    PI: 9.359
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf14922g00027.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.82.7e-3979139262
                    zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                               k++a++cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rkn+k+s
  Niben101Scf14922g00027.1  79 KDQAINCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGTLRNVPVGGGSRKNNKRS 139
                               5799*****************************************************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-2766131IPR003851Zinc finger, Dof-type
PfamPF027013.5E-3380137IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.77983137IPR003851Zinc finger, Dof-type
PROSITE patternPS01361085121IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
METTQWTQDI GIGKSMAAEI AAPNVTVEKK LLFPPLDLFS FFGFMETTQW TQDIGIVKSM  60
AAEIAAPNVT VEKKVRPVKD QAINCPRCNS TNTKFCYYNN YSLTQPRYFC KTCRRYWTEG  120
GTLRNVPVGG GSRKNNKRSS SSSSSTQKLP DLNPNSSSTP ISTLELLRSG IASRGYTSFI  180
SSPKPPDLNT LYTSGFPFQE LKPSAGSNDH AAVALSYSNG VQENGGARIM FPLGADHHHQ  240
SKGQENSAAG FWNGMLGGGS W
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009760287.11e-132PREDICTED: dof zinc finger protein DOF2.5 isoform X2
RefseqXP_016463172.11e-132PREDICTED: dof zinc finger protein DOF2.5-like isoform X3
SwissprotQ433851e-48DOF37_ARATH; Dof zinc finger protein DOF3.7
TrEMBLK4B0017e-82K4B001_SOLLC; Uncharacterized protein
STRINGSolyc01g096120.2.12e-81(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8824419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61850.39e-45Dof family protein